icon
GenSpectrum
  1. Home
  2. Swiss Wastewater
  3. Influenza

H1

nucleotide mutations

Frequencies of all nonsynonymous mutations (minimum read depth 100x) in the IAV H1 segment relative to reference CY121680.1 (A/California/07/2009(H1N1pdm)).

amino acid mutations

Frequencies of all nonsynonymous mutations (minimum read depth 100x) in the IAV H1 segment relative to reference CY121680.1 (A/California/07/2009(H1N1pdm)). Same data as under Nucleotide mutations, but nucleotide substitutions are translated into amino acid substitutions relative to HA1 + HA2 (HA0) gene, for genemap see here.

N1

nucleotide mutations

Frequencies of all nonsynonymous mutations (minimum read depth 100x) in the IAV N1 segment relative to reference CY121682.1 (A/California/07/2009(H1N1pdm)).

amino acid mutations

Frequencies of all nonsynonymous mutations (minimum read depth 100x) in the IAV N1 segment relative to reference CY121682.1 (A/California/07/2009(H1N1pdm)). Same data as under Nucleotide mutations, but nucleotide substitutions are translated into amino acid substitutions relative to NA gene, for genemap see here.

H3

nucleotide mutations

Frequencies of all nonsynonymous mutations (minimum read depth 100x) in the IAV H3 segment relative to reference CY163680.1 (A/Wisconsin/67/2005(H3N2)).

amino acid mutations

Frequencies of all nonsynonymous mutations (minimum read depth 100x) in the IAV H3 segment relative to reference CY163680.1 (A/Wisconsin/67/2005(H3N2)). Same data as under Nucleotide mutations, but nucleotide substitutions are translated into amino acid substitutions relative to HA1 + HA2 (HA0) gene, for genemap see here.

N2

nucleotide mutations

Frequencies of all nonsynonymous mutations (minimum read depth 100x) in the IAV N2 segment relative to reference CY163680.1 (A/Wisconsin/67/2005(H3N2)).

amino acid mutations

Frequencies of all nonsynonymous mutations (minimum read depth 100x) in the IAV N2 segment relative to reference CY163680.1 (A/Wisconsin/67/2005(H3N2)). Same data as under Nucleotide mutations, but nucleotide substitutions are translated into amino acid substitutions relative to NA gene, for genemap see here.